NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BISONR_C7389

Scaffold BISONR_C7389


Overview

Basic Information
Taxon OID2010170001 Open in IMG/M
Scaffold IDBISONR_C7389 Open in IMG/M
Source Dataset Name3_050719R
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3915
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Bison Spring, Yellowstone National Park, Usa, Analyzing Thermal Gradients

Source Dataset Sampling Location
Location NameBison Pool / Rosette Geyser, Yellowstone National Park
CoordinatesLat. (o)44.6Long. (o)-110.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016403Metagenome / Metatranscriptome247Y

Sequences

Protein IDFamilyRBSSequence
BISONR_210200F016403GGGGGMTPKVCLVMREFGIFNRAWTQILRNLGIDYTLCVTTGSGAGVSIQTPQGVFAAGSPDLRGYFRQFDAVILCDNTNDLAAPSFINYSVFWLRWNDPEEPCIPVFQSALFRGDYR

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